fix(prettier): Improve file selection in Prettier formatter, remove legacy package overrides, and update CI template indentation

ts/mod_format/formatters/prettier.formatter.ts

@@ -10,50 +10,62 @@ export class PrettierFormatter extends BaseFormatter {
   
   async analyze(): Promise<IPlannedChange[]> {
     const changes: IPlannedChange[] = [];
-    const globPattern = '**/*.{ts,tsx,js,jsx,json,md,css,scss,html,xml,yaml,yml}';
     
-    // Directories to exclude from formatting
-    const excludePatterns = [
-      'node_modules/**',
-      '.git/**',
-      'dist/**',
-      'dist_*/**',
-      '.nogit/**',
-      'coverage/**',
-      '.nyc_output/**',
-      'vendor/**',
-      'bower_components/**',
-      'jspm_packages/**',
-      '*.min.js',
-      '*.min.css'
+    // Define directories to format (TypeScript directories by default)
+    const includeDirs = [
+      'ts',
+      'ts_*',
+      'test',
+      'tests'
     ];
     
-    // Get all files that match the pattern
-    const files = await plugins.smartfile.fs.listFileTree('.', globPattern);
+    // File extensions to format
+    const extensions = '{ts,tsx,js,jsx,json,md,css,scss,html,xml,yaml,yml}';
     
-    // Filter out excluded directories and ensure we only process files
+    // Also format root-level config files
+    const rootConfigFiles = [
+      'package.json',
+      'tsconfig.json',
+      'npmextra.json',
+      '.prettierrc',
+      '.prettierrc.json',
+      '.prettierrc.js',
+      'readme.md',
+      'README.md',
+      'changelog.md',
+      'CHANGELOG.md',
+      'license',
+      'LICENSE',
+      '*.md'
+    ];
+    
+    // Collect all files to format
+    const allFiles: string[] = [];
+    
+    // Add files from TypeScript directories
+    for (const dir of includeDirs) {
+      const globPattern = `${dir}/**/*.${extensions}`;
+      const dirFiles = await plugins.smartfile.fs.listFileTree('.', globPattern);
+      allFiles.push(...dirFiles);
+    }
+    
+    // Add root config files
+    for (const pattern of rootConfigFiles) {
+      const rootFiles = await plugins.smartfile.fs.listFileTree('.', pattern);
+      // Only include files at root level (no slashes in path)
+      const rootLevelFiles = rootFiles.filter(f => !f.includes('/'));
+      allFiles.push(...rootLevelFiles);
+    }
+    
+    // Remove duplicates
+    const uniqueFiles = [...new Set(allFiles)];
+    
+    // Get all files that match the pattern
+    const files = uniqueFiles;
+    
+    // Ensure we only process actual files (not directories)
     const validFiles: string[] = [];
     for (const file of files) {
-      // Check if file matches any exclude pattern
-      let shouldExclude = false;
-      for (const pattern of excludePatterns) {
-        // Simple pattern matching for common cases
-        const patternBase = pattern.replace('/**', '').replace('**/', '').replace('*', '');
-        if (pattern.endsWith('/**') && file.startsWith(patternBase + '/')) {
-          shouldExclude = true;
-          logVerbose(`Excluding ${file} - matches exclude pattern ${pattern}`);
-          break;
-        } else if (pattern.startsWith('*.') && file.endsWith(patternBase)) {
-          shouldExclude = true;
-          logVerbose(`Excluding ${file} - matches exclude pattern ${pattern}`);
-          break;
-        }
-      }
-      
-      if (shouldExclude) {
-        continue;
-      }
-      
       try {
         const stats = await plugins.smartfile.fs.stat(file);
         if (!stats.isDirectory()) {