diff --git a/README.md b/README.md
index f279382..6b85ba6 100644
--- a/README.md
+++ b/README.md
@@ -46,10 +46,25 @@ Then add it to your package.json's script section to trigger a build:
 ### npmextra.json
 the npmts section in npmextra.json can be used to configure npmts.
 
+**Default**
+>Note: When you are using `"mode":"default"` it'll cause npmts to override any other settings you may have made except for tsOptions (ES target etc.)
+with default behaviour.
+
 ```json
 {
   "npmts":{
-    "mode":"default",
+    "mode":"default"
+  }
+}
+```
+
+**Custom settings**
+```json
+{
+  "mode":"custom",
+  "docs":false,
+  "test":true,
+  "npmts":{
     "ts":{
       "./customdir/*.ts":"./"
     },
@@ -64,7 +79,9 @@ the npmts section in npmextra.json can be used to configure npmts.
 
 | key | default value | description |
 | --- | --- | --- |
-| `"mode"` | `"default"` | "default" will do some default stuff, "custom" only does what you specify |
+| `"mode"` | `"default"` | "default" will do default stuff and override , "custom" only does what you specify |
+| `"docs"` | `true` | create docs for your module |
+| `"test"` | `true` | test your module |
 | `"ts"` | `{"./ts/*.ts":"./","./test/test.ts":"./test/"}` | allows you to define multiple ts portions |
 | `"tsOptions"` | `{"target":"ES5", "declaration":"true"}` | specify options for tsc |
 | `"cli"` | "false" | some modules are designed to be used from cli. If set to true NPMTS will create a cli.js that wires you dist files up for cli use. |
diff --git a/dist/cli.js b/dist/cli.js
deleted file mode 100644
index 9ab44a7..0000000
--- a/dist/cli.js
+++ /dev/null
@@ -1,2 +0,0 @@
-#!/usr/bin/env node
-var index = require("./index.js");
\ No newline at end of file
diff --git a/dist/npmts.configfile.d.ts b/dist/npmts.configfile.d.ts
deleted file mode 100644
index 1b6f363..0000000
--- a/dist/npmts.configfile.d.ts
+++ /dev/null
@@ -1,4 +0,0 @@
-/// <reference types="q" />
-import "typings-global";
-import plugins = require("./npmts.plugins");
-export declare var run: (argvArg: any) => plugins.Q.Promise<{}>;
diff --git a/dist/npmts.configfile.js b/dist/npmts.configfile.js
deleted file mode 100644
index 6cd72a3..0000000
--- a/dist/npmts.configfile.js
+++ /dev/null
@@ -1,40 +0,0 @@
-"use strict";
-require("typings-global");
-var plugins = require("./npmts.plugins");
-var paths = require("./npmts.paths");
-var npmts_promisechain_1 = require("./npmts.promisechain");
-exports.run = function (argvArg) {
-    var done = plugins.Q.defer();
-    npmts_promisechain_1.npmtsOra.text("looking for npmextra.json");
-    var defaultConfig = {
-        mode: "default",
-        notest: false,
-        nodocs: false
-    };
-    if (argvArg.notest) {
-        defaultConfig.notest = true;
-    }
-    ;
-    if (argvArg.nodocs) {
-        defaultConfig.nodocs = true;
-    }
-    ;
-    var config = plugins.npmextra.dataFor({
-        toolName: "npmts",
-        defaultSettings: defaultConfig,
-        cwd: paths.cwd
-    });
-    switch (config.mode) {
-        case "default":
-        case "custom":
-            plugins.beautylog.ok("mode is " + config.mode.yellow);
-            done.resolve(config);
-            break;
-        default:
-            plugins.beautylog.error("mode " + config.mode.yellow + " not recognised!".red);
-            process.exit(1);
-    }
-    ;
-    done.resolve(config);
-    return done.promise;
-};
diff --git a/dist/npmts.options.d.ts b/dist/npmts.options.d.ts
index f32981b..0ea592b 100644
--- a/dist/npmts.options.d.ts
+++ b/dist/npmts.options.d.ts
@@ -1,4 +1,15 @@
 /// <reference types="q" />
 import "typings-global";
 import plugins = require("./npmts.plugins");
-export declare var run: (configArg: any) => plugins.Q.Promise<{}>;
+export declare type npmtsMode = "default" | "custom";
+export interface npmtsConfig {
+    argv: any;
+    coverageTreshold: number;
+    docs: boolean;
+    mode: npmtsMode;
+    test: boolean;
+    testTs: any;
+    ts: any;
+    tsOptions: any;
+}
+export declare var run: (argvArg: any) => plugins.Q.Promise<{}>;
diff --git a/dist/npmts.options.js b/dist/npmts.options.js
index cd76c82..678a02d 100644
--- a/dist/npmts.options.js
+++ b/dist/npmts.options.js
@@ -1,16 +1,42 @@
 "use strict";
 require("typings-global");
 var plugins = require("./npmts.plugins");
+var paths = require("./npmts.paths");
 var npmts_promisechain_1 = require("./npmts.promisechain");
-exports.run = function (configArg) {
+;
+exports.run = function (argvArg) {
     var done = plugins.Q.defer();
-    var config = configArg;
-    npmts_promisechain_1.npmtsOra.text("now determining build options...");
+    var defaultConfig = {
+        argv: undefined,
+        coverageTreshold: 70,
+        docs: true,
+        mode: "default",
+        test: true,
+        testTs: {},
+        ts: {},
+        tsOptions: {}
+    };
+    // mix with configfile
+    npmts_promisechain_1.npmtsOra.text("looking for npmextra.json");
+    var config = plugins.npmextra.dataFor({
+        toolName: "npmts",
+        defaultSettings: defaultConfig,
+        cwd: paths.cwd
+    });
+    // check mode
+    switch (config.mode) {
+        case "default":
+        case "custom":
+            plugins.beautylog.ok("mode is " + config.mode);
+            done.resolve(config);
+            break;
+        default:
+            plugins.beautylog.error("mode " + config.mode + " not recognised!".red);
+            process.exit(1);
+    }
+    ;
     //handle default mode
     if (config.mode == "default") {
-        config.typings = [
-            "./ts/typings.json"
-        ];
         config.ts = (_a = {},
             _a["./ts/**/*.ts"] = "./dist/",
             _a
@@ -19,13 +45,17 @@ exports.run = function (configArg) {
             _b["./test/test.ts"] = "./test/",
             _b
         );
-        config.test = ["./index.js"];
     }
-    //check if config.tsOptions is available
-    config.tsOptions ? void (0) : config.tsOptions = {};
-    config.coverageTreshold ? void (0) : config.coverageTreshold = 70;
-    // handle docs
-    config.docs ? void (0) : config.docs = {};
+    ;
+    // mix with commandline
+    if (config.argv.notest) {
+        config.test = false;
+    }
+    ;
+    if (config.argv.nodocs) {
+        config.docs = false;
+    }
+    ;
     plugins.beautylog.ok("build options are ready!");
     done.resolve(config);
     return done.promise;
diff --git a/dist/npmts.promisechain.js b/dist/npmts.promisechain.js
index f282452..25177a4 100644
--- a/dist/npmts.promisechain.js
+++ b/dist/npmts.promisechain.js
@@ -6,15 +6,13 @@ var NpmtsAssets = require("./npmts.assets");
 var NpmtsCheck = require("./npmts.check");
 var NpmtsClean = require("./npmts.clean");
 var NpmtsCompile = require("./npmts.compile");
-var NpmtsConfigFile = require("./npmts.configfile");
 var NpmtsTypeDoc = require("./npmts.typedoc");
 var NpmtsOptions = require("./npmts.options");
 var NpmtsTests = require("./npmts.tests");
 exports.promisechain = function (argvArg) {
     var done = plugins.Q.defer();
     exports.npmtsOra.start();
-    NpmtsConfigFile.run(argvArg)
-        .then(NpmtsOptions.run)
+    NpmtsOptions.run(argvArg)
         .then(NpmtsClean.run)
         .then(NpmtsCheck.run)
         .then(NpmtsCompile.run)
diff --git a/dist/npmts.tests.js b/dist/npmts.tests.js
index d252fe5..93edb47 100644
--- a/dist/npmts.tests.js
+++ b/dist/npmts.tests.js
@@ -60,7 +60,7 @@ var coverage = function (configArg) {
 exports.run = function (configArg) {
     var done = plugins.Q.defer();
     var config = configArg;
-    if (config.notest != true) {
+    if (config.test === true) {
         npmts_promisechain_1.npmtsOra.text("now starting tests");
         plugins.beautylog.log("-------------------------------------------------------\n" +
             "*************************** TESTS: ***************************\n" +
diff --git a/dist/npmts.typedoc.js b/dist/npmts.typedoc.js
index 4b35e03..b25fb3e 100644
--- a/dist/npmts.typedoc.js
+++ b/dist/npmts.typedoc.js
@@ -27,15 +27,15 @@ var genTypeDoc = function (configArg) {
 };
 exports.run = function (configArg) {
     var done = plugins.Q.defer();
-    if (configArg.nodocs) {
-        done.resolve(configArg);
-    }
-    else {
+    if (configArg.docs) {
         genTypeDoc(configArg)
             .then(function () {
             done.resolve(configArg);
         });
     }
+    else {
+        done.resolve(configArg);
+    }
     ;
     return done.promise;
 };
diff --git a/package.json b/package.json
index 60a8fea..22363a1 100644
--- a/package.json
+++ b/package.json
@@ -30,23 +30,23 @@
   },
   "homepage": "https://gitlab.com/pushrocks/npmts#readme",
   "dependencies": {
-    "@types/gulp": "^3.8.28",
+    "@types/gulp": "^3.8.29",
     "@types/minimatch": "^2.0.28",
-    "@types/q": "^0.0.27",
-    "@types/shelljs": "^0.3.27",
-    "babel-preset-es2015": "^6.9.0",
-    "beautylog": "5.0.18",
+    "@types/q": "^0.x.x",
+    "@types/shelljs": "^0.3.28",
+    "babel-preset-es2015": "^6.13.2",
+    "beautylog": "5.0.20",
     "depcheck": "^0.6.4",
     "early": "^2.0.13",
     "gulp": "3.9.1",
     "gulp-babel": "^6.1.2",
     "gulp-function": "^1.3.6",
     "gulp-inject-modules": "^1.0.0",
-    "gulp-istanbul": "^1.0.0",
-    "gulp-mocha": "^2.2.0",
+    "gulp-istanbul": "^1.1.0",
+    "gulp-mocha": "^3.0.1",
     "gulp-sourcemaps": "^1.6.0",
     "gulp-typedoc": "^2.0.0",
-    "lodash": "^4.14.0",
+    "lodash": "^4.15.0",
     "npmextra": "^1.0.8",
     "projectinfo": "1.0.3",
     "q": "^1.4.1",
@@ -54,12 +54,12 @@
     "smartcli": "1.0.4",
     "smartcov": "0.0.9",
     "smartenv": "1.2.5",
-    "smartfile": "4.0.12",
+    "smartfile": "4.0.13",
     "smartpath": "3.2.2",
-    "smartstring": "^2.0.15",
+    "smartstring": "^2.0.17",
     "source-map-support": "^0.4.2",
-    "tsn": "^1.0.10",
-    "typedoc": "^0.4.4",
+    "tsn": "^1.0.12",
+    "typedoc": "^0.4.5",
     "typescript": "^2.0.0-dev.20160630",
     "typings-global": "*"
   },
diff --git a/ts/npmts.configfile.ts b/ts/npmts.configfile.ts
deleted file mode 100644
index 86d51ba..0000000
--- a/ts/npmts.configfile.ts
+++ /dev/null
@@ -1,36 +0,0 @@
-import "typings-global";
-import plugins = require("./npmts.plugins");
-import paths = require("./npmts.paths");
-import {npmtsOra} from "./npmts.promisechain";
-export var run = function(argvArg){
-    let done = plugins.Q.defer();
-    npmtsOra.text("looking for npmextra.json");
-    let defaultConfig = {
-        mode: "default",
-        notest:false,
-        nodocs:false
-    };
-    if(argvArg.notest){
-        defaultConfig.notest = true;
-    };
-    if(argvArg.nodocs){
-        defaultConfig.nodocs = true;
-    };
-    let config = plugins.npmextra.dataFor({
-        toolName:"npmts",
-        defaultSettings:defaultConfig,
-        cwd:paths.cwd
-    });
-    switch (config.mode){
-        case "default":
-        case "custom":
-            plugins.beautylog.ok("mode is " + config.mode.yellow);
-            done.resolve(config);
-            break;
-        default:
-            plugins.beautylog.error("mode " + config.mode.yellow + " not recognised!".red);
-            process.exit(1);
-    };
-    done.resolve(config);
-    return done.promise;
-};
\ No newline at end of file
diff --git a/ts/npmts.options.ts b/ts/npmts.options.ts
index d7e65a2..6d22e43 100644
--- a/ts/npmts.options.ts
+++ b/ts/npmts.options.ts
@@ -1,36 +1,76 @@
 import "typings-global";
 import plugins = require("./npmts.plugins");
+import paths = require("./npmts.paths");
 import {npmtsOra} from "./npmts.promisechain";
 
-export var run = function(configArg){
-    var done = plugins.Q.defer();
-    var config = configArg;
+export type npmtsMode = "default" | "custom"
 
-    npmtsOra.text("now determining build options...");
+export interface npmtsConfig {
+        argv:any,
+        coverageTreshold:number,
+        docs:boolean,
+        mode: npmtsMode,
+        test:boolean,
+        testTs:any,
+        ts:any,
+        tsOptions:any
+        
+};
+
+
+export var run = function(argvArg){
+    let done = plugins.Q.defer();
+    let defaultConfig:npmtsConfig = {
+        argv:undefined,
+        coverageTreshold: 70,
+        docs: true,
+        mode:"default",
+        test:true,
+        testTs:{},
+        ts:{},
+        tsOptions: {}
+    };
+
+
+    // mix with configfile
+    npmtsOra.text("looking for npmextra.json");
+    let config:npmtsConfig = plugins.npmextra.dataFor({
+        toolName:"npmts",
+        defaultSettings:defaultConfig,
+        cwd:paths.cwd
+    });
+
+    // check mode
+    switch (config.mode){
+        case "default":
+        case "custom":
+            plugins.beautylog.ok("mode is " + config.mode);
+            done.resolve(config);
+            break;
+        default:
+            plugins.beautylog.error("mode " + config.mode + " not recognised!".red);
+            process.exit(1);
+    };
 
     //handle default mode
     if (config.mode == "default"){
-        config.typings = [
-            "./ts/typings.json"
-        ];
         config.ts = {
             ["./ts/**/*.ts"]: "./dist/"
         };
         config.testTs = {
             ["./test/test.ts"]: "./test/"
         };
-        config.test = ["./index.js"];
-    }
-    
-    //check if config.tsOptions is available
-    config.tsOptions ? void(0) : config.tsOptions = {};
+    };
 
-    
 
-    config.coverageTreshold ? void(0) : config.coverageTreshold = 70;
+    // mix with commandline
+    if(config.argv.notest){
+        config.test = false;
+    };
+    if(config.argv.nodocs){
+        config.docs = false;
+    };
 
-    // handle docs
-    config.docs ? void(0) : config.docs = {};
 
     plugins.beautylog.ok("build options are ready!");
     done.resolve(config);
diff --git a/ts/npmts.promisechain.ts b/ts/npmts.promisechain.ts
index f73c4ee..8e8095e 100644
--- a/ts/npmts.promisechain.ts
+++ b/ts/npmts.promisechain.ts
@@ -8,7 +8,6 @@ import NpmtsAssets = require("./npmts.assets");
 import NpmtsCheck = require("./npmts.check");
 import NpmtsClean = require("./npmts.clean");
 import NpmtsCompile = require("./npmts.compile");
-import NpmtsConfigFile = require("./npmts.configfile");
 import NpmtsTypeDoc = require("./npmts.typedoc");
 import NpmtsOptions = require("./npmts.options");
 import NpmtsTests = require("./npmts.tests");
@@ -16,8 +15,7 @@ import NpmtsTests = require("./npmts.tests");
 export let promisechain = function(argvArg){
     let done = plugins.Q.defer();
     npmtsOra.start();
-    NpmtsConfigFile.run(argvArg)
-        .then(NpmtsOptions.run)
+    NpmtsOptions.run(argvArg)
         .then(NpmtsClean.run)
         .then(NpmtsCheck.run)
         .then(NpmtsCompile.run)
diff --git a/ts/npmts.tests.ts b/ts/npmts.tests.ts
index 4557d28..73643c2 100644
--- a/ts/npmts.tests.ts
+++ b/ts/npmts.tests.ts
@@ -66,7 +66,7 @@ let coverage = function(configArg){
 export let run = function(configArg) {
     let done = plugins.Q.defer();
     let config = configArg;
-    if(config.notest != true){
+    if(config.test === true){
         npmtsOra.text("now starting tests");
         plugins.beautylog.log(
             "-------------------------------------------------------\n" +
diff --git a/ts/npmts.typedoc.ts b/ts/npmts.typedoc.ts
index cceca40..129ee1a 100644
--- a/ts/npmts.typedoc.ts
+++ b/ts/npmts.typedoc.ts
@@ -32,13 +32,13 @@ let genTypeDoc = function (configArg) {
 
 export let run = function (configArg) {
     let done = plugins.Q.defer();
-    if (configArg.nodocs) {
-        done.resolve(configArg);
-    } else {
+    if (configArg.docs) {
         genTypeDoc(configArg)
             .then(() => {
                 done.resolve(configArg);
             });
+    } else {
+        done.resolve(configArg);
     };
     return done.promise;
 };
\ No newline at end of file