fix(cli): resolve process hang and improve output consistency

- Add process.stdin.destroy() after rl.close() in all interactive commands
  to properly release stdin and allow process to exit cleanly
- Replace raw console.log with logger methods throughout CLI handlers
- Convert manual box drawing to logger.logBox() in daemon.ts
- Standardize menu formatting with logger.info() and logger.dim()
- Improve migration output to only show when migrations actually run

Fixes issue where process would not exit after "Setup complete!" message
due to stdin keeping the event loop alive.

ts/cli/service-handler.ts

@@ -213,9 +213,11 @@ export class ServiceHandler {
         });
       };
 
-      console.log('\nNUPST Uninstaller');
-      console.log('===============');
-      console.log('This will completely remove NUPST from your system.\n');
+      logger.log('');
+      logger.highlight('NUPST Uninstaller');
+      logger.dim('===============');
+      logger.log('This will completely remove NUPST from your system.');
+      logger.log('');
 
       // Ask about removing configuration
       const removeConfig = await prompt(
@@ -251,17 +253,20 @@ export class ServiceHandler {
         }
 
         if (!uninstallScriptPath) {
-          console.error('Could not locate uninstall.sh script. Aborting uninstall.');
+          logger.error('Could not locate uninstall.sh script. Aborting uninstall.');
           rl.close();
+          process.stdin.destroy();
           process.exit(1);
         }
       }
 
       // Close readline before executing script
       rl.close();
+      process.stdin.destroy();
 
       // Execute uninstall.sh with the appropriate option
-      console.log(`\nRunning uninstaller from ${uninstallScriptPath}...`);
+      logger.log('');
+      logger.log(`Running uninstaller from ${uninstallScriptPath}...`);
 
       // Pass the configuration removal option as an environment variable
       const env = {
@@ -277,7 +282,7 @@ export class ServiceHandler {
         stdio: 'inherit', // Show output in the terminal
       });
     } catch (error) {
-      console.error(`Uninstall failed: ${error instanceof Error ? error.message : String(error)}`);
+      logger.error(`Uninstall failed: ${error instanceof Error ? error.message : String(error)}`);
       process.exit(1);
     }
   }