feat: Implement repositories for authentication, certificates, metrics, and platform services

- Added AuthRepository for user and settings management with CRUD operations.
- Introduced CertificateRepository to handle domains, certificates, and requirements.
- Created MetricsRepository for managing metrics and logs.
- Developed PlatformRepository for platform services and resources management.
- Established RegistryRepository for registry and token operations.
- Implemented ServiceRepository for CRUD operations on services.
- Defined types and interfaces in types.ts for database interactions.

ts/index.ts

@@ -4,7 +4,7 @@
 
 export { Onebox } from './classes/onebox.ts';
 export { runCli } from './cli.ts';
-export { OneboxDatabase } from './classes/database.ts';
+export { OneboxDatabase } from './database/index.ts';
 export { OneboxDockerManager } from './classes/docker.ts';
 export { OneboxServicesManager } from './classes/services.ts';
 export { OneboxRegistriesManager } from './classes/registries.ts';