fix(appdata): Fix iteration over overwriteObject in AppData and update configuration for dependency and path handling

.serena/memories/suggested_commands.md

@@ -0,0 +1,31 @@
+# Suggested Commands for npmextra Development
+
+## Build Commands
+- `pnpm run build` - Build the TypeScript project (uses tsbuild)
+- `pnpm test` - Run tests using tstest
+
+## Development Commands
+- `pnpm install` - Install dependencies
+- `pnpm install --save-dev <package>` - Add development dependencies  
+- `tsx <script>` - Run TypeScript files directly (tsx is globally available)
+
+## Git Commands
+- `git status` - Check current changes
+- `git add .` - Stage changes
+- `git commit -m "message"` - Commit changes (only when explicitly requested)
+- `git mv` - Move/rename files to preserve history
+
+## Testing
+- `pnpm test` - Run all tests
+- `tstest test/test.some.ts --verbose` - Run specific test file
+- Tests use @git.zone/tstest framework with tap-based structure
+
+## Type Checking
+- `pnpm run build` - Type check and build the project
+- `tsbuild check test/**/* --skiplibcheck` - Type check test files only
+
+## Directory Structure
+- Source code in `ts/` directory
+- Tests in `test/` directory  
+- Built output in `dist_ts/` directory
+- Temporary/debug files in `.nogit/` directory